Cypress provides various logging mechanisms to help developers track and debug test flows, including custom commands. To improve visibility for custom commands, you can add your own Cypress logs using `cy.log()` or more advanced methods like `Cypress.log()` with custom options. This allows you to see important details and actions taken at each step of your tests, making it easier to troubleshoot issues and understand how your tests interact with your web application. Additionally, Cypress provides the `cy.task()` method for logging messages on the server side, which can be useful for managing logs that need to be stored or analyzed later. By using these logging methods thoughtfully, you can create more reliable and maintainable tests over time.